STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF52852.1Coenzyme F420-0 gamma-glutamyl ligase. (252 aa)    
Predicted Functional Partners:
SDF50701.1
LPPG:FO 2-phospho-L-lactate transferase.
 
 
 0.974
SDG32034.1
Coenzyme F420-0:L-glutamate ligase.
 
  
 
0.896
SDF87054.1
FO synthase subunit 1.
 
   
 0.800
SDF48445.1
Methylenetetrahydromethanopterin reductase.
 
   
 0.796
SDF72272.1
Reduced coenzyme F420:NADP oxidoreductase.
 
   
 0.768
SDF87091.1
Phospholactate guanylyltransferase.
 
   
 0.758
SDF87068.1
FO synthase subunit 2.
 
   
 0.671
SDF79512.1
Thymidylate synthase.
     
 0.505
SDF28493.1
TIM-barrel protein, putative.
       0.495
SDG32388.1
Dihydropteroate synthase.
    
 0.434
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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