STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF63959.1Trans-aconitate methyltransferase. (259 aa)    
Predicted Functional Partners:
SDF86891.1
F420H2 dehydrogenase subunit C.
  
 0.841
SDF86855.1
F420H2 dehydrogenase subunit D.
   
 0.820
SDF46012.1
NAD(P)H dehydrogenase (quinone).
     
 0.770
SDF64864.1
SSU ribosomal protein S5P.
    
 0.765
SDF64001.1
Exodeoxyribonuclease VII small subunit.
 
    0.751
SDF64039.1
Exodeoxyribonuclease VII large subunit.
 
     0.706
SDF43738.1
N2-methylguanosine tRNA methyltransferase.
   
 0.689
SDF53929.1
tRNA (adenine57-N1/adenine58-N1)-methyltransferase.
  
 0.681
SDG29696.1
DNA repair exonuclease SbcCD nuclease subunit.
  
 0.652
SDF80874.1
Small nuclear ribonucleoprotein, LSM family.
  
 0.644
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.