STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF83669.1uroporphyrinogen-III synthase; Manually curated. (268 aa)    
Predicted Functional Partners:
SDF83702.1
uroporphyrinogen-III C-methyltransferase.
 
 0.998
SDF88463.1
Hydroxymethylbilane synthase.
 
 0.996
SDF88413.1
Porphobilinogen synthase.
 
 0.984
SDF88344.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
 
 
 0.921
SDF49274.1
Precorrin-3 methyltransferase.
    
 0.851
SDF49136.1
Cobalt-factor II C20-methyltransferase.
    
 0.826
SDF88387.1
glutamyl-tRNA reductase.
 
  
 0.819
SDF88440.1
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.735
SDF57897.1
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.703
SDF67542.1
NhaP-type Na+/H+ or K+/H+ antiporter.
 
  
 0.698
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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