Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDF88808.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
SDG10583.1
Nucleolar GTP-binding protein.
  
 
 0.972
SDF64809.1
LSU ribosomal protein L30P.
   
 
 0.928
SDF80595.1
SSU ribosomal protein S8E.
   
 
 0.924
SDF34692.1
23S rRNA Um-2552 2'-O-methyltransferase.
   
 
 0.920
SDG30153.1
LSU ribosomal protein L10P.
  
 
 0.915
SDF44440.1
rRNA biogenesis protein Nop56/Nop58.
  
 
 0.905
SDF82697.1
U3 small nucleolar ribonucleoprotein protein IMP4; Manually curated.
   
 
 0.904
SDF64584.1
tRNA pseudouridine synthase B.
  
 
 0.902
SDF64907.1
LSU ribosomal protein L18P.
  
 
 0.891
SDF97228.1
LSU ribosomal protein L7AE.
 
 
 0.886
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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