STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF93904.1Ribose-5-phosphate isomerase. (230 aa)    
Predicted Functional Partners:
SDF72981.1
3-hexulose-6-phosphate synthase.
  
 
 0.976
SDG10875.1
Ribose-phosphate pyrophosphokinase.
  
 
 0.868
SDG25081.1
Inosine-guanosine kinase /cytidine kinase.
 
  
 0.861
SDG26526.1
Glyceraldehyde 3-phosphate dehydrogenase (NAD(P)+).
    
 0.854
SDF49783.1
Phosphomannomutase / phosphoglucomutase.
 
  
 0.847
SDF73868.1
Bifunctional enzyme Fae/Hps.
    
 0.841
SDG32034.1
Coenzyme F420-0:L-glutamate ligase.
  
 
 0.793
SDF96761.1
Pyridoxal phosphate synthase yaaE subunit.
     
 0.774
SDF96737.1
Pyridoxal phosphate synthase yaaD subunit.
    
  0.770
SDF93927.1
aspartyl-tRNA synthetase.
       0.763
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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