STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG14903.1ATP-dependent RNA helicase DeaD. (430 aa)    
Predicted Functional Partners:
SDF44440.1
rRNA biogenesis protein Nop56/Nop58.
  
 0.943
SDG10583.1
Nucleolar GTP-binding protein.
   
 0.937
SDF31498.1
SSU ribosomal protein S9P.
  
 0.934
SDG30153.1
LSU ribosomal protein L10P.
  
 0.927
SDF65399.1
SSU ribosomal protein S3P.
   
 0.917
SDF88808.1
Hypothetical protein.
  
 0.917
SDF97228.1
LSU ribosomal protein L7AE.
   
 0.916
SDF34692.1
23S rRNA Um-2552 2'-O-methyltransferase.
  
 0.915
SDF35507.1
Translation elongation factor 2 (EF-2/EF-G).
  
 0.910
SDF80595.1
SSU ribosomal protein S8E.
  
 0.905
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.