STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG20010.1L-asparagine transporter. (428 aa)    
Predicted Functional Partners:
SDF26294.1
Glycosidase.
  
 0.888
SDG19978.1
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.
  
 
 0.683
SDF82792.1
Ribosomal RNA-processing protein RRP42.
     
 0.600
SDF82836.1
Ribosomal RNA-processing protein RRP41/SKI6.
   
  0.590
SDF92813.1
Amino acid permease.
  
     0.567
SDG22162.1
Tyrosine decarboxylase / aspartate 1-decarboxylase.
 
 
 0.513
SDF64584.1
tRNA pseudouridine synthase B.
   
 0.494
SDF73686.1
3-dehydroquinate dehydratase.
  
 0.429
SDF73718.1
Shikimate dehydrogenase.
  
 0.429
SDF67542.1
NhaP-type Na+/H+ or K+/H+ antiporter.
   
 
 0.415
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.