STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XALC_2060Hypothetical protein. (137 aa)    
Predicted Functional Partners:
XALC_2059
Hypothetical protein.
       0.679
XALC_2613
Hypothetical protein.
  
     0.651
XALC_3014
Hypothetical protein.
  
     0.651
XALC_2331
Hypothetical protein.
  
     0.623
zur
Probable zinc uptake regulator protein; Belongs to the Fur family.
       0.548
XALC_0391
Hypothetical secreted protein.
  
     0.500
gltX
Probable glutamyl-trna synthetase (glutamate--trna ligase) (glurs) protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.500
virB8
Putative type iv secretion system protein virb8.
  
     0.488
virB1
Putative virb1 protein.
  
     0.448
XALC_0553
Putative tonb-dependent outer membrane receptor protein.
  
     0.418
Your Current Organism:
Xanthomonas albilineans
NCBI taxonomy Id: 380358
Other names: X. albilineans GPE PC73, Xanthomonas albilineans GPE PC73, Xanthomonas albilineans str. GPE PC73, Xanthomonas albilineans strain GPE PC73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.