Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XALC_2139Probable abc transporter atp-binding protein. (239 aa)    
Predicted Functional Partners:
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
 0.999
XALC_2672
Putative yjgp/yjgq family permease protein.
 
 
 0.995
XALC_2671
Putative yjgp/yjgq family permease protein.
 
 
 0.994
lptA
Putative osta-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
  
 0.992
kdsC
Probable 3-deoxy-manno-octulosonate-8-phosphatase protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
  
 0.910
XALC_2135
Putative sugar phosphate isomerase involved in capsule formation, kpsf/gutq protein.
 
  
 0.858
lpxA
Probable udp-n-acetylglucosamine acyltransferase protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.784
rpoN2
Probable rna polymerase sigma-54 factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.760
XALC_2141
Putative sigma-54 modulation protein.
  
  
 0.701
ugpC
Multiple sugar transport system ATP-binding protein; Putative sugar abc transporter atp biding, molybdate tungstate binding, mop abc transporter, atp-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.699
Your Current Organism:
Xanthomonas albilineans
NCBI taxonomy Id: 380358
Other names: X. albilineans GPE PC73, Xanthomonas albilineans GPE PC73, Xanthomonas albilineans str. GPE PC73, Xanthomonas albilineans strain GPE PC73
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