STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XALC_2345Putative von willebrand factor, type a protein. (343 aa)    
Predicted Functional Partners:
XALC_2347
Hypothetical protein.
 
  
 0.974
XALC_2343
Hypothetical transmembrane protein.
 
   
 0.973
XALC_2346
Hypothetical protein.
 
     0.937
XALC_2344
Putative tpr domain protein; von willebrand factor, type a.
   
0.929
XALC_2348
Putative moxr-like atpase protein.
 
  
 0.912
XALC_0619
Hypothetical moxr-like atpase protein.
 
  
 0.493
ubiA
Probable 4-hydroxybenzoate octaprenyltransferase ubia protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
   
  
 0.455
pilO
Probable pilus iv assembly membrane protein pilo.
       0.425
pilN
Probable type iv pilus assembly protein piln.
       0.425
pilM
Probable type iv pilus assembly protein pilm.
       0.425
Your Current Organism:
Xanthomonas albilineans
NCBI taxonomy Id: 380358
Other names: X. albilineans GPE PC73, Xanthomonas albilineans GPE PC73, Xanthomonas albilineans str. GPE PC73, Xanthomonas albilineans strain GPE PC73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.