STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_0488HD-GYP domain; Identified by match to protein family HMM PF01966. (432 aa)    
Predicted Functional Partners:
AHA_2094
HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
    0.762
AHA_0487
Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF00994; Belongs to the CinA family.
       0.601
AHA_0903
Conserved hypothetical protein.
  
 
   0.587
metA
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.555
nifJ-2
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
   
   0.462
AHA_2968
PAS:GGDEF domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01814; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481.
 
 
 
 0.456
AHA_2188
PAS; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
   
 0.445
AHA_0701
Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
   0.444
AHA_0044
Sensory box/GGDEF family protein, putative; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
   0.418
AHA_1068
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   
 0.411
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.