Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHA_0814 | AHA_0815 | AHA_0814 | AHA_0815 | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | 0.774 |
| AHA_0814 | AHA_0816 | AHA_0814 | AHA_0816 | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | 0.589 |
| AHA_0814 | AHA_2658 | AHA_0814 | AHA_2658 | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | Conserved hypothetical protein. | 0.461 |
| AHA_0814 | rumA-1 | AHA_0814 | AHA_0817 | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.408 |
| AHA_0815 | AHA_0814 | AHA_0815 | AHA_0814 | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | 0.774 |
| AHA_0815 | AHA_0816 | AHA_0815 | AHA_0816 | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | 0.577 |
| AHA_0815 | rumA-1 | AHA_0815 | AHA_0817 | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.426 |
| AHA_0816 | AHA_0814 | AHA_0816 | AHA_0814 | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | 0.589 |
| AHA_0816 | AHA_0815 | AHA_0816 | AHA_0815 | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | 0.577 |
| AHA_0816 | rumA-1 | AHA_0816 | AHA_0817 | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.645 |
| AHA_2658 | AHA_0814 | AHA_2658 | AHA_0814 | Conserved hypothetical protein. | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | 0.461 |
| rumA-1 | AHA_0814 | AHA_0817 | AHA_0814 | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. | 0.408 |
| rumA-1 | AHA_0815 | AHA_0817 | AHA_0815 | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Conserved hypothetical protein; Identified by match to protein family HMM PF07308. | 0.426 |
| rumA-1 | AHA_0816 | AHA_0817 | AHA_0816 | 23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Sensor protein BarA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518. | 0.645 |