STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1018EAL domain, putative; Identified by match to protein family HMM PF00563. (245 aa)    
Predicted Functional Partners:
AHA_4220
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
 
 0.948
AHA_0996
Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.944
AHA_2968
PAS:GGDEF domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01814; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481.
 
 
 0.858
AHA_2359
Sensory box/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.834
AHA_3970
Sensory box protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.834
AHA_0053
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00990; match to protein family HMM PF07721; match to protein family HMM TIGR00254.
  
 
 
 0.821
AHA_0383
Msha biogenesis protein mshh; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.814
AHA_3954
PAS:GGDEF domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254.
 
  
 0.813
AHA_3964
Fog: GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.812
AHA_0729
GGDEF/response regulator receiver domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.810
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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