STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1055Integral membrane protein DUF6; Identified by match to protein family HMM PF00892. (298 aa)    
Predicted Functional Partners:
AHA_1054
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
     0.569
AHA_1059
AraD protein; Identified by match to protein family HMM PF00596.
 
  
 0.566
AHA_1056
GntP; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.
       0.535
AHA_1057
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
       0.535
AHA_1060
YgbK domain protein; Identified by match to protein family HMM PF07005.
 
     0.526
AHA_1058
Identified by match to protein family HMM PF01261; Belongs to the hyi family.
       0.464
AHA_1061
NAD binding domain of 6-phosphogluconate dehydrogenase; Identified by match to protein family HMM PF03446.
       0.464
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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