STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1069Transcriptional regulator; Identified by match to protein family HMM PF00486. (222 aa)    
Predicted Functional Partners:
AHA_2766
Outer membrane protein.
  
     0.694
AHA_2764
deCa-heme c-type cytochrome.
  
     0.663
AHA_0411
Outer membrane protein.
  
   
 0.512
AHA_1238
Conserved hypothetical protein.
  
   
 0.477
AHA_2765
Nitrate/tmao reductase; Identified by match to protein family HMM TIGR01905.
  
     0.466
AHA_1363
Conserved hypothetical protein.
  
     0.436
AHA_3169
Identified by match to protein family HMM PF00027.
  
     0.404
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.