STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1451Leader peptidase PilD; Identified by match to protein family HMM PF01478. (138 aa)    
Predicted Functional Partners:
AHA_1450
Flp/Fap pilin component superfamily; Identified by match to protein family HMM PF04964.
       0.784
AHA_1452
Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF06981.
       0.764
AHA_1454
Hypothetical protein; Identified by Glimmer2; putative.
       0.714
AHA_1453
Protein transporter, outer bacterial membrane secretin (secretin) family; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
       0.704
AHA_1455
Conserved hypothetical protein.
       0.686
AHA_1456
CpaF; Identified by match to protein family HMM PF00437.
       0.685
AHA_1457
Flp pilus assembly protein TadB; Identified by match to protein family HMM PF00482.
       0.684
AHA_1458
Flp pilus assembly protein TadC; Identified by match to protein family HMM PF00482.
       0.684
AHA_1460
Conserved hypothetical protein; Identified by match to protein family HMM PF07811.
       0.667
AHA_1461
Hypothetical protein; Identified by Glimmer2; putative.
       0.660
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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