STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1741Collagenase; Identified by match to protein family HMM PF01136. (290 aa)    
Predicted Functional Partners:
AHA_1742
STM-proteaseA; Identified by match to protein family HMM PF01136.
 
 
 0.979
AHA_1744
Sterol binding protein; Identified by match to protein family HMM PF02036.
 
  
 0.967
yegQ
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
 
 
 0.767
AHA_1043
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
 
 
 0.705
AHA_3945
Heme/copper membrane protein; Identified by match to protein family HMM PF05940.
 
    0.677
AHA_2709
O-methyltransferase; Identified by match to protein family HMM PF01596.
  
  
 0.568
narQ
Nitrate/nitrite sensor histidine kinase NarQ; Identified by similarity to SP:P27896; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
    0.547
AHA_0341
Identified by match to protein family HMM PF04247.
 
     0.415
udk
Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.
  
    0.408
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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