STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1908LysR-family transcriptional regulator; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family. (54 aa)    
Predicted Functional Partners:
AHA_1907
LysR-family transcriptional regulator; Identified by match to protein family HMM PF03466.
     0.947
AHA_1909
Pirin, N-terminal:Pirin, C-terminal; Identified by match to protein family HMM PF02678; match to protein family HMM PF05726; Belongs to the pirin family.
 
 
   0.721
AHA_0233
Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
     0.502
AHA_0232
LysR family transcriptional regulator; Identified by match to protein family HMM PF03466.
  
     0.432
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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