STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_1935Ferric cations import ATP-binding protein FbpC 2; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (364 aa)    
Predicted Functional Partners:
AHA_1934
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.986
AHA_1936
ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.954
AHA_0652
iron(III) ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189.
  
  
 
0.913
fbpB
iron(III) ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.885
AHA_0650
Iron binding protein FbpA; Identified by match to protein family HMM PF01547.
  
 
 0.865
AHA_3816
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.782
potH
Putrescine ABC transporter, permease protein PotH; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 
 
 0.764
AHA_1933
glycine/D-amino acid oxidase; Identified by match to protein family HMM PF01266.
  
  
 0.739
AHA_3817
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.732
potI
Putrescine ABC transporter, permease protein PotI; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
 
  
 0.729
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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