STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_2001Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496. (538 aa)    
Predicted Functional Partners:
OppB
Oligopeptide ABC transporter, permease protein OppB; Identified by match to protein family HMM PF00528.
 
 0.985
AHA_2611
Oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.
 
 0.982
AHA_2609
Oligopeptide ABC transporter, ATP-binding protein OppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.981
AHA_2610
Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.981
AHA_2849
Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.909
AHA_2613
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.905
AHA_3658
Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.905
AHA_3428
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
  
 0.716
AHA_2519
ABC nickel/di-oligopepetide transporter, permease subunit; Identified by match to protein family HMM PF00528.
  
 0.688
AHA_3094
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.666
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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