STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_2004Conserved hypothetical protein. (191 aa)    
Predicted Functional Partners:
flgM
anti-sigma-D factor; Identified by similarity to GB:AAN08633.1; match to protein family HMM PF04316.
 
  
 0.902
fliJ
Flagellar export protein FliJ; Identified by match to protein family HMM TIGR02473.
 
    0.811
flgK
Flagellar hook-associated protein FlgK; Identified by similarity to GB:AAN08646.1; match to protein family HMM PF06429; match to protein family HMM TIGR02492.
 
  
 0.810
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.800
fliD
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
    0.790
AHA_0877
Type IV pilus assembly protein PilZ; Identified by match to protein family HMM PF07238.
  
   
 0.782
AHA_0660
Sodium-type flagellar motor component.
  
     0.774
AHA_1802
ATPase involved in DNA repair.
  
     0.774
AHA_3560
Conserved hypothetical protein.
  
     0.774
AHA_3683
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.