STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_2115Conserved hypothetical protein; Belongs to the UPF0253 family. (68 aa)    
Predicted Functional Partners:
AHA_0893
YfbU domain protein; Identified by match to protein family HMM PF03887.
  
     0.752
AHA_0368
ATPase of the AAA+ class.
  
     0.741
AHA_4058
Chloride channel protein EriC; Identified by match to protein family HMM PF06496.
  
     0.721
AHA_3423
Esterase YafA; Identified by match to protein family HMM PF06500; Belongs to the UPF0255 family.
  
     0.719
mtlR
Mannitol operon repressor; Identified by similarity to SP:P36563; match to protein family HMM PF05068.
  
     0.717
AHA_1912
Identified by match to protein family HMM PF06183.
  
     0.705
AHA_1764
Ubiquitin ligase sinat5; Identified by match to protein family HMM PF07191.
  
     0.701
AHA_3170
Conserved hypothetical protein; Belongs to the UPF0267 family.
  
     0.694
AHA_0411
Outer membrane protein.
  
     0.692
MukB
Chromosome partition protein MukB.
  
     0.678
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.