STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_2166Inner membrane transport protein YijE; Identified by match to protein family HMM PF00892. (307 aa)    
Predicted Functional Partners:
arcC-1
Carbamate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; Belongs to the carbamate kinase family.
       0.456
hydA
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
 
     0.455
AHA_2465
Cytochrome c-type protein NrfB.
  
     0.450
AHA_2762
Formate-dependent nitrite reductase.
  
     0.432
AHA_0454
Putative mono-oxygenase.
  
     0.418
dsdC
D-serine deaminase transcriptional activator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02036; Belongs to the LysR transcriptional regulatory family.
  
    0.405
AHA_2172
FAD binding domain in molybdopterin dehydrogenase protein; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.
  
     0.401
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.