STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_2314Transcriptional regulator, lacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (334 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.851
AHA_2703
Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 
 0.744
rbsB
Ribose ABC transporter, periplasmic ribose-binding protein; Identified by similarity to SP:P02925; match to protein family HMM PF00532.
 
  
0.653
rbsC
Ribose ABC transporter, permease protein; Identified by similarity to SP:P04984; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.636
rbsA
Ribose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.556
rbsD
Cytoplasmic D-ribose-binding protein RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.550
AHA_2348
Multiphosphoryl transfer protein (MTP) (Phosphotransferase FPrprotein) (Pseudo-HPr); Identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
   
 
 0.545
AHA_1418
Fructose specific permease; Identified by match to protein family HMM PF00359.
   
 
 0.490
AHA_4006
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM; Identified by match to protein family HMM PF00381; match to protein family HMM PF03610; match to protein family HMM TIGR01003; match to protein family HMM TIGR02364.
   
 
 0.458
ptsH
Phosphocarrier protein PtsH; Identified by similarity to SP:P16481; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
   
 
 0.456
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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