STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_3003Amino acid permease; Identified by match to protein family HMM PF00324. (447 aa)    
Predicted Functional Partners:
AHA_0495
Glycosidase; Identified by match to protein family HMM PF00128.
    
 0.523
AHA_0837
Alpha-amylase; Identified by similarity to SP:P41131; match to protein family HMM PF00128; match to protein family HMM PF00801; match to protein family HMM PF02806.
    
 0.523
AHA_1215
Alpha-amylase; Identified by match to protein family HMM PF00128.
    
 0.523
AHA_1304
Alpha-amylase; Identified by similarity to SP:P22630; match to protein family HMM PF00128.
    
 0.523
AHA_3172
Trehalose-6-phosphate hydrolase; Identified by match to protein family HMM PF00128.
    
 0.523
treC
Alpha,alpha-phosphotrehalase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403.
    
 0.523
AHA_4149
Maltodextrin glucosidase; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family.
    
 0.523
gabT
4-aminobutyrate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.495
AHA_0739
Putative amidase; Identified by match to protein family HMM PF01425.
 
 
 
 0.489
AHA_3295
Conserved hypothetical protein; Identified by match to protein family HMM PF06476.
  
     0.472
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.