STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilMType IV pilus biogenesis protein PilM; Identified by match to protein family HMM TIGR01175. (356 aa)    
Predicted Functional Partners:
pilN
Type IV pilus biogenesis PilN; Identified by match to protein family HMM PF05137.
 
 
 0.999
pilQ
Type IV pilus secretin PilQ; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
 
 0.996
pilO
Type IV pilus biogenesis protein PilO; Identified by match to protein family HMM PF04350.
 
 
 0.996
AHA_3191
Type IV pilus biogenesis protein PilP; Identified by match to protein family HMM PF04351.
 
 
 0.981
AHA_0259
LysM domain protein; Identified by match to protein family HMM PF01476.
  
 
   0.911
pilC
Type 4 fimbrial assembly protein PilC; Identified by match to protein family HMM PF00482.
 
 
 
 0.869
AHA_0387
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.826
AHA_3665
Twitching mobility protein; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.823
pilB
Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.
 
 
 
 0.814
AHA_3666
Twitching motility protein PilU; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
  
  
 0.801
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.