STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_3777Identified by match to protein family HMM PF02566. (155 aa)    
Predicted Functional Partners:
AHA_3775
Ribosomal protein serine acetyltransferase; Identified by match to protein family HMM PF00583.
       0.760
AHA_3776
Conserved hypothetical protein; Identified by match to protein family HMM PF00581.
       0.743
AHA_1110
DPS family protein; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
  
  
 0.588
AHA_3778
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
  
    0.555
AHA_2718
Chase4 domain family; Identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF05228.
   
    0.551
hchA
Chaperone protein HchA; Identified by match to protein family HMM PF01965.
 
  
 0.474
AHA_1644
2,5-diketo-D-gluconic acid reductase B; Identified by match to protein family HMM PF00248.
  
  
 0.444
AHA_3994
Catalase; Identified by match to protein family HMM PF00199; Belongs to the catalase family.
  
  
 0.423
AHA_3774
Conserved hypothetical protein; Identified by match to protein family HMM PF07350.
       0.414
bamE
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.408
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.