STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_4024Intracellular sulfur oxidation protein DsrE; Identified by match to protein family HMM PF02635; match to protein family HMM TIGR03012. (130 aa)    
Predicted Functional Partners:
AHA_4023
DsrF protein; Identified by match to protein family HMM PF02635; match to protein family HMM TIGR03010; Belongs to the DsrF/TusC family.
 
 0.999
AHA_4022
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03011.
  
 
 0.988
AHA_2676
Dissimilatory sulfite reductase, gamma subunit; Part of a sulfur-relay system.
 
 
 0.987
tusA
Conserved hypothetical protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
 
 0.974
AHA_1675
Conserved hypothetical protein; Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
  
 
 0.963
AHA_4026
MukF protein.
  
    0.611
AHA_4025
Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
       0.572
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
       0.518
AHA_3107
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.468
AHA_2246
Conserved hypothetical protein; Identified by match to protein family HMM PF02620.
  
     0.439
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.