STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_4173Long-chain-fatty-acid--luciferin-component ligase, Acyl-protein synthase. (352 aa)    
Predicted Functional Partners:
AHA_4172
Putative acyl-CoA reductase LuxC.
 
 
 
 0.975
AHA_4176
Conserved hypothetical protein; Identified by similarity to GB:2203284A.
 
   
 0.953
AHA_4174
Long-chain fatty acid-CoA ligase; Identified by match to protein family HMM PF00501.
 
   
 0.934
AHA_4177
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.921
AHA_4175
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
     0.822
AHA_4178
NeuA protein; Identified by match to protein family HMM PF02348.
     
 0.714
nueB
Pseudaminic acid synthase, NeuB; Identified by similarity to GB:AAD45660.1; match to protein family HMM PF01354; match to protein family HMM PF03102.
     
 0.642
AHA_0878
Conserved hypothetical protein.
  
     0.597
AHA_4179
Putative FlmD; Identified by similarity to GB:AAD45659.1.
       0.565
AHA_4181
Conserved hypothetical protein; Identified by similarity to GB:AAY90924.1.
       0.536
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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