STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHA_4229Putative lipooligosaccharide biosynthesis protein LpsA; Identified by match to protein family HMM PF01755. (221 aa)    
Predicted Functional Partners:
AHA_4231
WavL; Identified by match to protein family HMM PF01522.
 
   
 0.846
AHA_4230
O-antigen polymerase; Identified by match to protein family HMM PF04932.
 
   
 0.844
rfaD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
       0.714
AHA_4228
Putative heptosyltransferase III.
     
 0.514
AHA_4233
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.482
AHA_2125
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0149 family.
  
     0.442
AHA_0340
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.434
AHA_4167
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     
 0.431
AHA_4247
Tetratricopeptide repeat domain protein.
  
     0.413
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.