STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3XRG1_ASPNAFibronectin type-III domain-containing protein. (1067 aa)    
Predicted Functional Partners:
G3Y8Q7_ASPNA
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.789
G3YBG2_ASPNA
Semialdhyde_dh domain-containing protein.
   
 
  0.675
G3YHL0_ASPNA
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.607
G3XLP0_ASPNA
Uncharacterized protein.
     
 0.574
G3XXT7_ASPNA
Biotin synthase.
   
 
  0.565
G3XT64_ASPNA
Uncharacterized protein.
  
 
   0.515
G3XRM0_ASPNA
AlcB domain-containing protein.
   
 
  0.482
G3Y767_ASPNA
AlcB domain-containing protein.
   
 
  0.482
MED20
Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
     0.470
G3YG93_ASPNA
Uncharacterized protein.
  
     0.465
Your Current Organism:
Aspergillus niger
NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015
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