G3XT27_ASPNA protein (Aspergillus niger) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3XT27_ASPNA

PHD-type domain-containing protein. (848 aa)

Predicted Functional Partners:

G3XLN9_ASPNA

0.999

G3XLP6_ASPNA

0.999

G3YD15_ASPNA

0.999

G3YE65_ASPNA

0.999

G3Y5Y0_ASPNA

0.998

G3Y6Q0_ASPNA

0.998

G3YBU1_ASPNA

0.998

G3XY26_ASPNA

0.997

G3YFI3_ASPNA

0.997

G3YH18_ASPNA

0.997

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XLN9_ASPNA	G3XLP6_ASPNA	G3XLN9	G3XLP6	TAF11 protein.	TAF domain-containing protein.	0.998
G3XLN9_ASPNA	G3XT27_ASPNA	G3XLN9	G3XT27	TAF11 protein.	PHD-type domain-containing protein.	0.999
G3XLN9_ASPNA	G3XY26_ASPNA	G3XLN9	G3XY26	TAF11 protein.	TAFII55_N domain-containing protein.	0.997
G3XLN9_ASPNA	G3Y5Y0_ASPNA	G3XLN9	G3Y5Y0	TAF11 protein.	Uncharacterized protein.	0.997
G3XLN9_ASPNA	G3Y6Q0_ASPNA	G3XLN9	G3Y6Q0	TAF11 protein.	Uncharacterized protein.	0.998
G3XLN9_ASPNA	G3YBU1_ASPNA	G3XLN9	G3YBU1	TAF11 protein.	TAF12 subunit protein.	0.998
G3XLN9_ASPNA	G3YD15_ASPNA	G3XLN9	G3YD15	TAF11 protein.	DUF3591 domain-containing protein.	0.998
G3XLN9_ASPNA	G3YE65_ASPNA	G3XLN9	G3YE65	TAF11 protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.997
G3XLN9_ASPNA	G3YFI3_ASPNA	G3XLN9	G3YFI3	TAF11 protein.	Transcription initiation factor.	0.997
G3XLN9_ASPNA	G3YH18_ASPNA	G3XLN9	G3YH18	TAF11 protein.	DUF4211 domain-containing protein.	0.971
G3XLP6_ASPNA	G3XLN9_ASPNA	G3XLP6	G3XLN9	TAF domain-containing protein.	TAF11 protein.	0.998
G3XLP6_ASPNA	G3XT27_ASPNA	G3XLP6	G3XT27	TAF domain-containing protein.	PHD-type domain-containing protein.	0.999
G3XLP6_ASPNA	G3XY26_ASPNA	G3XLP6	G3XY26	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.998
G3XLP6_ASPNA	G3Y5Y0_ASPNA	G3XLP6	G3Y5Y0	TAF domain-containing protein.	Uncharacterized protein.	0.997
G3XLP6_ASPNA	G3Y6Q0_ASPNA	G3XLP6	G3Y6Q0	TAF domain-containing protein.	Uncharacterized protein.	0.998
G3XLP6_ASPNA	G3YBU1_ASPNA	G3XLP6	G3YBU1	TAF domain-containing protein.	TAF12 subunit protein.	0.998
G3XLP6_ASPNA	G3YD15_ASPNA	G3XLP6	G3YD15	TAF domain-containing protein.	DUF3591 domain-containing protein.	0.998
G3XLP6_ASPNA	G3YE65_ASPNA	G3XLP6	G3YE65	TAF domain-containing protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.997
G3XLP6_ASPNA	G3YFI3_ASPNA	G3XLP6	G3YFI3	TAF domain-containing protein.	Transcription initiation factor.	0.997
G3XLP6_ASPNA	G3YH18_ASPNA	G3XLP6	G3YH18	TAF domain-containing protein.	DUF4211 domain-containing protein.	0.971