STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmHS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (296 aa)    
Predicted Functional Partners:
ACG57540.1
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: aae:aq_556 penicillin binding protein 2.
  
 0.890
ACG57692.1
PFAM: ribosomal protein S9; KEGG: aae:aq_1878 30S ribosomal protein S9.
   
 
 0.848
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.835
rpsP
PFAM: ribosomal protein S16; KEGG: aae:aq_123 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.832
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
 
 0.779
ACG57539.1
PFAM: CinA domain protein; KEGG: aae:aq_1996 competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.
       0.773
ACG57541.1
Hypothetical protein.
       0.773
ACG57543.1
PFAM: histone deacetylase superfamily; KEGG: aae:aq_2110 acetoin utilization protein.
       0.773
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.773
ACG57545.1
KEGG: aae:aq_2138 putative biotin biosynthesis protein.
       0.773
Your Current Organism:
Hydrogenobaculum sp. Y04AAS1
NCBI taxonomy Id: 380749
Other names: H. sp. Y04AAS1
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