STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACG57665.1PFAM: ribosomal protein L31; KEGG: aae:aq_873a ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (61 aa)    
Predicted Functional Partners:
rpsP
PFAM: ribosomal protein S16; KEGG: aae:aq_123 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.995
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.994
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.993
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.992
rpmB
PFAM: ribosomal protein L28; KEGG: aae:aq_080 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.991
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.991
rpmA
PFAM: ribosomal protein L27; KEGG: aae:aq_1773a 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.991
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aae:aq_1102 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.991
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.991
ACG57692.1
PFAM: ribosomal protein S9; KEGG: aae:aq_1878 30S ribosomal protein S9.
  
 
 0.990
Your Current Organism:
Hydrogenobaculum sp. Y04AAS1
NCBI taxonomy Id: 380749
Other names: H. sp. Y04AAS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.