OBQ74366.1 protein (Mesorhizobium loti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBQ74366.1

Ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Predicted Functional Partners:

OBQ74365.1

0.991

OBQ74367.1

0.991

OBQ74368.1

0.990

OBQ74369.1

0.644

OBQ67359.1

0.540

OBQ69732.1

0.535

OBQ74353.1

0.522

OBQ69733.1

0.516

OBQ61217.1

0.514

OBQ61219.1

0.505

Your Current Organism:

Mesorhizobium loti

NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBQ61217.1	OBQ61219.1	A8146_17510	A8146_17520	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
OBQ61217.1	OBQ67359.1	A8146_17510	A8146_07655	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
OBQ61217.1	OBQ69733.1	A8146_17510	A8146_29725	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
OBQ61217.1	OBQ74353.1	A8146_17510	A8146_00860	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
OBQ61217.1	OBQ74365.1	A8146_17510	A8146_00925	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
OBQ61217.1	OBQ74366.1	A8146_17510	A8146_00930	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
OBQ61217.1	OBQ74367.1	A8146_17510	A8146_00935	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter permease subunit EhuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
OBQ61217.1	OBQ74368.1	A8146_17510	A8146_00940	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter permease subunit EhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
OBQ61219.1	OBQ61217.1	A8146_17520	A8146_17510	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
OBQ61219.1	OBQ67359.1	A8146_17520	A8146_07655	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
OBQ61219.1	OBQ69732.1	A8146_17520	A8146_29720	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
OBQ61219.1	OBQ69733.1	A8146_17520	A8146_29725	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
OBQ61219.1	OBQ74353.1	A8146_17520	A8146_00860	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OBQ61219.1	OBQ74366.1	A8146_17520	A8146_00930	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
OBQ61219.1	OBQ74367.1	A8146_17520	A8146_00935	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter permease subunit EhuC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
OBQ61219.1	OBQ74368.1	A8146_17520	A8146_00940	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter permease subunit EhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
OBQ67359.1	OBQ61217.1	A8146_07655	A8146_17510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
OBQ67359.1	OBQ61219.1	A8146_07655	A8146_17520	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
OBQ67359.1	OBQ74353.1	A8146_07655	A8146_00860	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
OBQ67359.1	OBQ74365.1	A8146_07655	A8146_00925	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873

page 1 of 5

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About