STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ67884.1Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (505 aa)    
Predicted Functional Partners:
OBQ67883.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
OBQ67886.1
CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
OBQ67885.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.929
OBQ67887.1
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.922
OBQ67889.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.918
OBQ67888.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.907
OBQ67882.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.900
OBQ75063.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
OBQ62612.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
OBQ67881.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.868
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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