STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ63432.1DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (53 aa)    
Predicted Functional Partners:
OBQ58500.1
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.689
OBQ73336.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
  
 0.689
OBQ61408.1
DUF3008 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.683
OBQ57819.1
Ornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.617
OBQ71187.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.617
OBQ63433.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
OBQ63707.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.406
OBQ63434.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
OBQ63430.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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