STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ62530.1Type IV secretion system protein VirB5; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
OBQ62527.1
Type IV secretion system protein VirB2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.765
OBQ62528.1
Type IV secretion system protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
OBQ62529.1
Type IV secretion system protein VirB4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
OBQ62526.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
OBQ62531.1
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
OBQ62532.1
Type IV secretion system protein VirB7; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
OBQ62533.1
Type IV secretion system protein VirB8; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
OBQ62534.1
Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
OBQ62535.1
Type IV secretion system protein VirB10; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
OBQ62536.1
P-type DNA transfer ATPase VirB11; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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