STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ62536.1P-type DNA transfer ATPase VirB11; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
OBQ62534.1
Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
OBQ62535.1
Type IV secretion system protein VirB10; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
OBQ62529.1
Type IV secretion system protein VirB4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.970
OBQ62533.1
Type IV secretion system protein VirB8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.953
OBQ62531.1
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.936
OBQ62526.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.886
OBQ62528.1
Type IV secretion system protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.874
OBQ62532.1
Type IV secretion system protein VirB7; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OBQ62616.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
OBQ75068.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.757
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.