STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ62552.1P-type conjugative transfer ATPase TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
trbC
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
OBQ62554.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
OBQ62555.1
Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
OBQ62556.1
P-type conjugative transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
OBQ62557.1
P-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
trbF
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
OBQ62559.1
P-type conjugative transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
OBQ62709.1
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
OBQ62550.1
Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
msi031
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.944
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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