STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ62600.1Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
OBQ62717.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.794
OBQ62603.1
Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
OBQ62602.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.749
OBQ62599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.701
OBQ69549.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
OBQ68017.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.461
OBQ69874.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.454
OBQ69530.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.449
OBQ74205.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.424
OBQ59285.1
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.422
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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