STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ58589.1Protein ndvB; Derived by automated computational analysis using gene prediction method: Protein Homology. (2863 aa)    
Predicted Functional Partners:
OBQ57891.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.661
OBQ70942.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.661
ndvA
Cyclic beta-1,2-glucan ABC transporter; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 0.613
OBQ59331.1
Trehalose utilization protein ThuA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.606
OBQ67628.1
Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.567
pgi
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.
  
  
 0.540
OBQ74996.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
OBQ71036.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.538
OBQ67631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.522
OBQ60200.1
alpha-D-glucose phosphate-specific phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.503
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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