STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ58643.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
A8146_12255
Integrase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.724
OBQ68141.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.695
xerC
Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.657
OBQ58638.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.636
OBQ58688.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
OBQ57996.1
Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.446
OBQ67790.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.427
OBQ58644.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.415
OBQ59380.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.401
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.