STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ70961.1AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
OBQ70962.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.763
OBQ70959.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.707
OBQ71054.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.683
OBQ59185.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.682
OBQ59186.1
Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.667
OBQ74706.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.666
OBQ70960.1
D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.660
OBQ63350.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.641
OBQ67263.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.626
OBQ59332.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.553
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.