STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBQ70173.1NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
A8146_00010
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.797
OBQ62471.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.797
OBQ74946.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.720
OBQ74948.1
Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.647
OBQ63719.1
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.603
OBQ63566.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.556
OBQ70198.1
Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.555
OBQ74947.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.549
OBQ70174.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.530
OBQ74949.1
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.518
Your Current Organism:
Mesorhizobium loti
NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti
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