STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ57068.1Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (354 aa)    
Predicted Functional Partners:
SDZ54058.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.947
SDZ57076.1
Ribose transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.898
SDY78933.1
Ribose-binding protein.
  0.879
SDZ16971.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  0.868
SDZ53868.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
  0.849
SDZ52471.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
  0.844
SDZ55610.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
  0.844
SDZ55589.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
  0.841
SDZ54066.1
Ribose transport system ATP-binding protein.
  
  0.830
SDZ25551.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
  0.828
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.