STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ57455.1Capsular exopolysaccharide family. (473 aa)    
Predicted Functional Partners:
SDZ57440.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.999
SDZ57507.1
Capsular exopolysaccharide family.
 
 
0.966
SDZ57448.1
Hypothetical protein.
  
    0.914
SDZ32802.1
Hypothetical protein.
  
 0.874
SDY54804.1
Hypothetical protein.
  
 
 0.837
SDY71639.1
Serine/threonine protein kinase.
    
 
 0.806
SDZ10899.1
Serine/threonine protein kinase.
    
 
 0.806
SDZ13683.1
Serine/threonine protein kinase.
    
 
 0.806
SDZ45256.1
PASTA domain, binds beta-lactams.
    
 
 0.806
SDZ57497.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 0.790
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.