STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY41127.1Uncharacterized membrane protein YgaE, UPF0421/DUF939 family. (372 aa)    
Predicted Functional Partners:
SDY41160.1
Hypothetical protein; Belongs to the GcvT family.
       0.822
SDY41199.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
       0.822
SDY41096.1
Hypothetical protein.
       0.623
SDY41259.1
Hypothetical protein.
       0.516
SDY41064.1
Hypothetical protein.
  
     0.433
SDY50387.1
Protein of unknown function.
  
     0.413
SDZ04509.1
Glutamate synthase (NADH) large subunit.
       0.410
SDZ05428.1
Protein of unknown function.
  
     0.409
SDY41293.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.400
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.