STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY47969.1Inosose dehydratase. (297 aa)    
Predicted Functional Partners:
SDY48005.1
Predicted dehydrogenase.
 
 
  0.971
SDY69976.1
Predicted dehydrogenase.
 
 
  0.886
SDY48039.1
Hypothetical protein.
       0.773
SDZ56745.1
Sugar phosphate isomerase/epimerase.
  
     0.770
SDY47875.1
L-rhamnonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.768
SDY47904.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
       0.768
SDY47936.1
GDSL-like Lipase/Acylhydrolase family protein.
       0.768
SDY79720.1
Predicted dehydrogenase.
 
 
  0.763
SDY79661.1
Predicted dehydrogenase.
 
 
  0.740
SDZ39347.1
Predicted dehydrogenase.
 
 
  0.730
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.