STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY49564.1AraC-type DNA-binding protein. (324 aa)    
Predicted Functional Partners:
SDZ04509.1
Glutamate synthase (NADH) large subunit.
    
  0.783
SDY64478.1
AraC-type DNA-binding protein; Manually curated.
  
     0.730
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.729
SDZ50801.1
AraC-type DNA-binding protein.
  
   0.709
SDZ29052.1
Transcriptional regulator, AraC family.
  
     0.701
SDZ49643.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.650
SDZ54467.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.624
SDZ41601.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.576
SDZ50579.1
Adenylate cyclase, class 3.
   
 
  0.574
SDY49498.1
Hypothetical protein.
       0.536
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.